Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs2605626 chr11:93253903 A/G 0.00016 178 34.53 16.07 13.13 KM Plot
PAAD rs2605627 chr11:93259515 A/G 0.000145 177 34.53 16.07 13.13 KM Plot
PAAD rs26392 chr5:94614527 G/A 4.43E-8 173 2.15 16.6 14.48 KM Plot
PAAD rs2657879 chr12:56865338 C/T 1.58E-5 178 6.78 15.72 15.55 KM Plot
PAAD rs2734245 chr21:37020035 C/T 2.29E-6 178 5.52 17.4 15.13 KM Plot
PAAD rs2734246 chr21:37019992 C/T 2.29E-6 178 5.52 17.4 15.13 KM Plot
PAAD rs2734247 chr21:37019859 G/T 2.29E-6 178 5.52 17.4 15.13 KM Plot
PAAD rs27688 chr5:94615820 T/C 4.43E-8 173 2.15 16.6 14.48 KM Plot
PAAD rs27768 chr5:94600757 G/A 5.47E-8 176 2.15 17.5 14.6 KM Plot
PAAD rs28372776 chr4:88343912 AGCTACTCCCGTTC/A 0.000161 171 15.87 15.55 6.4 KM Plot
PAAD rs28480463 chr3:170083604 C/T 0.000151 178 7.67 15.13 15.97 KM Plot
PAAD rs28556985 chr19:49351149 C/T 8.54E-13 175 16.17 12.6 1.37 KM Plot
PAAD rs2862185 chr2:70509689 A/G 0 178 15.4 17.32 1.03 KM Plot
PAAD rs2863274 chr15:100094725 A/G 0.000126 178 15.48 15.95 11.48 KM Plot
PAAD rs2865091 chr6:169888764 T/C 2.16E-6 176 15.57 15.4 3.43 KM Plot